Browsing by Subject "Algorithms"

Now showing items 1-5 of 5

  • BWT-runs Compressed Data Structures for Pan-Genomics Text Indexing 

    Brown, Nathaniel (2023-04-14)
    The FM-index is used in many bioinformatics applications; however, it cannot handle large text collections. This is of particular concern due to reference bias; references fail to capture the required genetic diversity. A ...

  • A Cache-Friendly BWT Layout 

    Li, Yansong (2023-08-21)
    The Burrows-Wheeler Transform (BWT) is a widely used succinct data structure in bioinformatics. However, one of the main concerns that researchers still face when using BWT is its processing time due to the lack of access ...

  • Clocking out: modeling phage-induced lysis of Escherichia coli 

    Ryan, G. L.; Rutenberg, A. D. (2007-07)
    Phage lambda lyses the host Escherichia coli at a precisely scheduled time after induction. Lysis timing is determined by the action of phage holins, which are small proteins that induce hole formation in the bacterium's ...

  • FINDING STRUCTURE IN THE PHYLOGENY SEARCH SPACE 

    Khalafvand, Tyler Seyed Amin (2015)
    A phylogenetic tree is a graphical representation of inferred evolutionary relationships between a set of species or taxa. Phylogenetic trees play an important role in diverse research fields, including molecular biology, ...

  • Set-Point Algorithms for Active Heave Compensation of Towed Bodies 

    Calnan, Clark (2016-12-20)
    Active heave compensation is a technique used in marine applications to attenuate undesirable wave motions between a load and its host vessel. Motion attenuation is often achieved by reeling in or reeling out a cable ...