http://hdl.handle.net/10222/10559 2013-06-19T23:48:12Z http://hdl.handle.net/10222/22285 Structural Studies Of Apelin And Its Receptor As Well As The Characteristics And Causes Of Membrane Protein Helix Kinks Langelaan, David Apelin, the endogenous ligand to the apelin receptor, is a small peptide involved with cardiovascular regulation. Using nuclear magnetic resonance (NMR) spectroscopy, I demonstrate that at low temperature, residues R6-L9 and G13-F17 of apelin are more structured than the rest of the peptide. I also study the interactions of apelin with sodium dodecylsulphate (SDS), dodecylphosphocholine (DPC) and 1-palmitoyl-2-hydroxy-sn- glycero-3-[phospho-RAC-(1-glycerol)] (LPPG) micelles. Apelin binds to SDS micelles through residues R6-L9, with structure being induced in this region as well as the C- terminus of the peptide. The binding to micelles along with the corresponding change in structure make it likely that apelin binds to the apelin receptor following the membrane catalysis hypothesis. NMR spectroscopy was used to determine the structure of the N- terminal tail and first transmembrane segment of the apelin receptor (AR55) in DPC micelles. AR55 has two disrupted helices from D14-K25 and from A29-K57. The second helix is the membrane spanning region of AR55 and has a significant kink located at N46. Mutagenesis of the apelin receptor and functional assays indicate that G42, G45 and N46 are essential for the proper trafficking and function of AR. In the N-terminal tail, the functionally critical residues E20 and D23 form an anionic face that could take part in initial binding of apelin to AR. The structure of AR55 was also determined in SDS micelles, LPPG micelles and a 1:1 water: 1,1,1,3,3,3-hexafluoroisopropanol (HFIP) solution. Overall, the micelle spanning region of AR55 has a consistent structure with a kink near N46. The N-terminal tail of AR55 is more variable, having similar structures in the micelle conditions but being largely helical in 50% HFIP. NMR relaxation experiments indicate that the N-terminal tail of AR55 undergoes much more motion in LPPG micelles compared to SDS and DPC micelles. Finally, I created a program named MC-HELAN that characterizes the kinks that occur in protein helices. I used MC- HELAN to analyze all non-redundant membrane protein structures as of March 2010. Membrane protein helix kinks are remarkably common and diverse. Initial attempts to predict membrane protein kinks using only the protein sequence were unsuccessful. 2013-06-18T00:00:00Z http://hdl.handle.net/10222/22284 Generation Of Cell-Penetrating Heme Oxygenase Proteins To Improve The Resistance Of Steatotic Livers To Reperfusion Injury Following Transplantation Livingstone, Scott Liver transplantation is the only life-saving treatment for patients with end-stage liver disease; however, organ availability is insufficient to meet demands. Steatotic livers are extended criteria donor (ECD) organs that could be used for transplantation if not for an increased susceptibility ischemia reperfusion injury (IRI). Heme oxygenase-1 is a gene, that when upregulated has be shown to reduce IRI in animal models of transplantation. Increasing HO-1 activity in steatotic livers by delivery of a functional cell-penetrating HO-1 protein (through the use of cell-penetrating peptides) may provide protection against IRI, making these organs useful for transplantation. The purpose of this thesis was the generation and testing of a cell-penetrating HO-1 protein. HO-1 and EGFP gene sequences were cloned into the pET-28B(+) vector in frame with a CPP or TAT sequence. Resulting plasmids were cloned into E. coli, and protein expression was induced using IPTG. Proteins were purified using Ni-NTA affinity chromatography under denaturing and non-denaturing conditions. Non-denatured proteins were tested for HO-1 activity and the ability of both denatured and non-denatured proteins to transduce cells in vitro was tested by fluorescence microscopy. The cell-penetrating ability of nondenatured proteins was further tested in J774, HepG2 and HUVEC cells using immunofluorescence. Five HO-1 and two EGFP cell-penetrating proteins were generated expressed and purified successfully. Purified non-denatured HO-1 retains its enzymatic activity. Non-denatured CPP-EGFP and CPP-HO1 penetrated cells more effectively than their denatured counterparts. CPP-EGFP and CPP-HO1 proteins are able to penetrate multiple cell types in vitro. Successful generation and testing of a cell-penetrating HO-1 protein, for use in an animal model of steatotic liver transplantation. This protein demonstrates promise for use as a potential therapeutic agent in the field of liver transplantation. 2013-06-18T00:00:00Z http://hdl.handle.net/10222/22283 STUDIES ON THE T CELL SUPPRESSIVE AND ANTI-ANGIOGENIC ACTIVITIES OF THE DIETARY PHYTOCHEMICAL PIPERINE Doucette, Carolyn Dawn Piperine, a pungent alkaloid found in the fruits of long and black pepper plants, has diverse physiological effects, including anti-inflammatory and anti-cancer activities. The effect of piperine on the function of T cells and endothelial cells, two important elements of inflammation, have not been examined previously and were the focus of this study. Piperine inhibited the proliferation of human endothelial cells, murine T cells, and IL-2-dependent CTLL-2 T cells, without affecting cell viability. Progression into the S phase of the cell cycle was inhibited in all three cell types. In T cells, piperine inhibited expression of the early activation marker CD25, production of IFN-γ, IL-2, IL-4, and IL-17A, and the generation of cytotoxic effector cells. In endothelial cells, piperine inhibited migration and tubule formation in vitro and ex vivo, as well as breast cancer cell-induced angiogenesis in chick embryos. Piperine inhibited Akt phosphorylation in signaling pathways associated with growth factor receptors on endothelial cells, T cell receptor and CD28 on T cells, and IL-2 receptor on CTLL-2 cells. Additionally, piperine inhibited ERK1/2 and IκB phosphorylation in activated T cells, as well as STAT3, STAT5, and ERK1/2 phosphorylation in IL-2-stimulated CTLL-2 cells. However, piperine is not a broad-spectrum inhibitor of phosphorylation as it did not inhibit ZAP-70 phosphorylation in activated T cells or phosphorylation of JAK1 and JAK3 in IL-2-stimulated CTLL-2 cells. Piperine-mediated inhibition of T cell activation and IL-2 receptor signaling suppresses T cell proliferation and effector cell differentiation, suggesting possible utility in treating T cell-mediated autoimmune and chronic inflammatory conditions. Additionally, the potent anti-angiogenic activity of piperine warrants further study for the prevention of inflammation- and cancer-promoting angiogenesis. 2013-06-18T00:00:00Z http://hdl.handle.net/10222/22282 TOOLS FOR IDENTIFYING FUNCTIONS OF TYPE III SECRETION SYSTEM EFFECTORS FROM SHIGELLA FLEXNERI Sidik, Saima Shigellae are pathogenic bacteria that cause the disease shigellosis. Two methods for studying secreted effectors encoded by this pathogen’s virulence plasmid are described. First, protein microarrays were used to identify substrates of an E3 ubiquitin ligase called IpaH7.8. Second, a deletion collection containing mutants for every gene on the virulence plasmid was used in two screens: one to identify mutants that elicit atypical levels of Interleukin-8 (IL-8) from U937 cells, and one to identify mutants that bind the dye Congo red abnormally. Although protein microarrays were an ineffective tool, the deletion collection proved valuable. Most mutants were less effective at sequestering Congo red than wild-type S. flexneri, although this ability was enhanced in several mutants. Four mutants, ΔospB, Δorf186, ΔmxiH and ΔmxiK, elicited higher levels of IL-8 from U937 cells than wild type S. flexneri. These results validate the use of the deletion collection as a tool for studying bacterial pathogenesis. 2013-06-18T00:00:00Z