Browsing by Author "dae4bab8-668a-4ecb-b575-1b1e8985e0ef"
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A Kraken-like tool with k given at query time and an index for finding approximately longest common substrings
Kashgouli, Sana (2023-08-23)For highly repetitive texts such as pangenomic databases, indexes based on grammars (or Lempel-Ziv parses, string attractors, etc.) are usually significantly smaller than indexes based on the Burrows-Wheeler Transform. ...